J3_4V6S_012
3D structure
- PDB id
- 4V6S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.1 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 4V6S|1|AB|U|2833
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6S_012 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.4125
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V6S|1|AB|G|2812
4V6S|1|AB|A|2813
4V6S|1|AB|A|2814
4V6S|1|AB|C|2815
*
4V6S|1|AB|G|2831
4V6S|1|AB|U|2832
4V6S|1|AB|U|2833
4V6S|1|AB|G|2834
4V6S|1|AB|A|2835
4V6S|1|AB|U|2836
*
4V6S|1|AB|A|2882
4V6S|1|AB|A|2883
4V6S|1|AB|U|2884
4V6S|1|AB|G|2885
4V6S|1|AB|A|2886
4V6S|1|AB|A|2887
4V6S|1|AB|C|2888
Current chains
- Chain AB
- 23S ribomosomal RNA
Nearby chains
- Chain A3
- 50S ribosomal protein L32
- Chain AE
- 50S ribosomal protein L3
- Chain AP
- 50S ribosomal protein L17
- Chain AU
- 50S ribosomal protein L22
Coloring options: