J3_4V6S_028

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6S_028 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.4769

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

4V6S|1|AB|U|1344
4V6S|1|AB|C|1345
4V6S|1|AB|G|1346
4V6S|1|AB|A|1347
4V6S|1|AB|C|1348
4V6S|1|AB|C|1349
4V6S|1|AB|C|1350
*
4V6S|1|AB|G|1381
4V6S|1|AB|G|1382
4V6S|1|AB|A|1383
4V6S|1|AB|A|1384
4V6S|1|AB|A|1385
*
4V6S|1|AB|U|1402
4V6S|1|AB|A|1403

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AV

50S ribosomal protein L23