J3_4V6S_031

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

4V6S|1|BA|C|48, 4V6S|1|BA|A|51

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6S_031 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.2779

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V6S|1|BA|G|46
4V6S|1|BA|C|47
4V6S|1|BA|C|48
4V6S|1|BA|U|49
4V6S|1|BA|A|50
4V6S|1|BA|A|51
4V6S|1|BA|C|52
*
4V6S|1|BA|G|359
4V6S|1|BA|G|360
4V6S|1|BA|G|361
4V6S|1|BA|G|362
4V6S|1|BA|A|363
4V6S|1|BA|A|364
4V6S|1|BA|U|365
4V6S|1|BA|A|366
4V6S|1|BA|U|367
*
4V6S|1|BA|A|393
4V6S|1|BA|G|394
4V6S|1|BA|C|395

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BN

30S ribosomal protein S12

Chain BR

30S ribosomal protein S16