3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
4V6T|1|AA|A|975, 4V6T|1|AA|G|976, 4V6T|1|AA|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6T_005 not in the Motif Atlas
Geometric match to J3_5J7L_006
Geometric discrepancy: 0.0918
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V6T|1|AA|U|955
4V6T|1|AA|U|956
4V6T|1|AA|U|957
4V6T|1|AA|A|958
4V6T|1|AA|A|959
4V6T|1|AA|U|960
4V6T|1|AA|U|961
4V6T|1|AA|C|962
*
4V6T|1|AA|G|973
4V6T|1|AA|A|974
4V6T|1|AA|A|975
4V6T|1|AA|G|976
4V6T|1|AA|A|977
4V6T|1|AA|A|978
4V6T|1|AA|C|979
4V6T|1|AA|C|980
4V6T|1|AA|U|981
4V6T|1|AA|U|982
4V6T|1|AA|A|983
4V6T|1|AA|C|984
*
4V6T|1|AA|G|1221
4V6T|1|AA|G|1222
4V6T|1|AA|C|1223
4V6T|1|AA|U|1224
4V6T|1|AA|A|1225

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AJ
30S ribosomal protein S10
Chain AM
30S ribosomal protein S13
Chain AN
30S ribosomal protein S14
Chain AS
30S ribosomal protein S19
Chain AV
Transfer-messenger RNA; tmRNA
Chain AW
SsrA-binding protein

Coloring options:


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