3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
CAAG*CCCAAAC*GUG
Length
14 nucleotides
Bulged bases
4V6T|1|BA|A|1609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6T_018 not in the Motif Atlas
Homologous match to J3_5J7L_042
Geometric discrepancy: 0.1116
The information below is about J3_5J7L_042
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_19545.2
Basepair signature
cWW-F-F-tHS-cWW-cWW-F-F
Number of instances in this motif group
6

Unit IDs

4V6T|1|BA|C|1306
4V6T|1|BA|A|1307
4V6T|1|BA|A|1308
4V6T|1|BA|G|1309
*
4V6T|1|BA|C|1605
4V6T|1|BA|C|1606
4V6T|1|BA|C|1607
4V6T|1|BA|A|1608
4V6T|1|BA|A|1609
4V6T|1|BA|A|1610
4V6T|1|BA|C|1611
*
4V6T|1|BA|G|1620
4V6T|1|BA|U|1621
4V6T|1|BA|G|1622

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B2
50S ribosomal protein L34

Coloring options:


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