J3_4V6T_020

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6T_020 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1525

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V6T|1|BA|C|2091
4V6T|1|BA|U|2092
4V6T|1|BA|G|2093
*
4V6T|1|BA|C|2196
4V6T|1|BA|U|2197
4V6T|1|BA|A|2198
4V6T|1|BA|A|2199
4V6T|1|BA|C|2200
*
4V6T|1|BA|G|2223
4V6T|1|BA|G|2224
4V6T|1|BA|A|2225
4V6T|1|BA|C|2226
4V6T|1|BA|A|2227
4V6T|1|BA|G|2228

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28