J3_4V6T_037

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

4V6T|1|BA|U|34, 4V6T|1|BA|U|448, 4V6T|1|BA|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6T_037 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0583

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

4V6T|1|BA|C|32
4V6T|1|BA|C|33
4V6T|1|BA|U|34
4V6T|1|BA|G|35
*
4V6T|1|BA|C|445
4V6T|1|BA|G|446
4V6T|1|BA|A|447
4V6T|1|BA|U|448
4V6T|1|BA|A|449
4V6T|1|BA|G|450
4V6T|1|BA|U|451
4V6T|1|BA|G|452
4V6T|1|BA|A|453
4V6T|1|BA|A|454
4V6T|1|BA|C|455
4V6T|1|BA|C|456
4V6T|1|BA|A|457
4V6T|1|BA|G|458
4V6T|1|BA|U|459
4V6T|1|BA|A|460
4V6T|1|BA|C|461
*
4V6T|1|BA|G|468
4V6T|1|BA|G|469
4V6T|1|BA|A|470
4V6T|1|BA|A|471
4V6T|1|BA|A|472
4V6T|1|BA|G|473

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BE

50S ribosomal protein L4

Chain BQ

50S ribosomal protein L20

Chain BT

50S ribosomal protein L23