3D structure

PDB id
4V6V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracycline resistance protein Tet(O) bound to the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
9.8 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
4V6V|1|AA|A|975, 4V6V|1|AA|G|976
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6V_007 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.2446
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V6V|1|AA|U|955
4V6V|1|AA|U|956
4V6V|1|AA|U|957
4V6V|1|AA|A|958
4V6V|1|AA|A|959
4V6V|1|AA|U|960
4V6V|1|AA|U|961
4V6V|1|AA|C|962
*
4V6V|1|AA|G|973
4V6V|1|AA|A|974
4V6V|1|AA|A|975
4V6V|1|AA|G|976
4V6V|1|AA|A|977
4V6V|1|AA|A|978
4V6V|1|AA|C|979
4V6V|1|AA|C|980
4V6V|1|AA|U|981
4V6V|1|AA|U|982
4V6V|1|AA|A|983
4V6V|1|AA|C|984
*
4V6V|1|AA|G|1221
4V6V|1|AA|G|1222
4V6V|1|AA|C|1223
4V6V|1|AA|U|1224
4V6V|1|AA|A|1225

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AJ
30S ribosomal protein S10
Chain AM
30S ribosomal protein S13
Chain AN
30S ribosomal protein S14
Chain AS
30S ribosomal protein S19

Coloring options:


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