J3_4V6V_014

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6V_014 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.2055

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4V6V|1|BA|G|30
4V6V|1|BA|C|31
*
4V6V|1|BA|G|474
4V6V|1|BA|C|475
4V6V|1|BA|G|476
4V6V|1|BA|A|477
4V6V|1|BA|A|478
4V6V|1|BA|A|479
4V6V|1|BA|A|480
4V6V|1|BA|G|481
*
4V6V|1|BA|C|509
4V6V|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BU

50S ribosomal protein L20

Chain BW

50S ribosomal protein L22

Chain BY

50S ribosomal protein L24