J3_4V6V_015

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

4V6V|1|BA|U|34, 4V6V|1|BA|U|448, 4V6V|1|BA|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6V_015 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.2883

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

4V6V|1|BA|C|32
4V6V|1|BA|C|33
4V6V|1|BA|U|34
4V6V|1|BA|G|35
*
4V6V|1|BA|C|445
4V6V|1|BA|G|446
4V6V|1|BA|A|447
4V6V|1|BA|U|448
4V6V|1|BA|A|449
4V6V|1|BA|G|450
4V6V|1|BA|U|451
4V6V|1|BA|G|452
4V6V|1|BA|A|453
4V6V|1|BA|A|454
4V6V|1|BA|C|455
4V6V|1|BA|C|456
4V6V|1|BA|A|457
4V6V|1|BA|G|458
4V6V|1|BA|U|459
4V6V|1|BA|A|460
4V6V|1|BA|C|461
*
4V6V|1|BA|G|468
4V6V|1|BA|G|469
4V6V|1|BA|A|470
4V6V|1|BA|A|471
4V6V|1|BA|A|472
4V6V|1|BA|G|473

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BF

50S ribosomal protein L4

Chain BU

50S ribosomal protein L20

Chain BW

50S ribosomal protein L22

Chain BX

50S ribosomal protein L23