J3_4V6X_006
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GCAG*CGUAG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 4V6X|1|A5|A|1613
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6X_006 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.1763
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V6X|1|A5|G|1545
4V6X|1|A5|C|1546
4V6X|1|A5|A|1547
4V6X|1|A5|G|1548
*
4V6X|1|A5|C|1580
4V6X|1|A5|G|1581
4V6X|1|A5|U|1582
4V6X|1|A5|A|1583
4V6X|1|A5|G|1584
*
4V6X|1|A5|U|1609
4V6X|1|A5|C|1610
4V6X|1|A5|C|1611
4V6X|1|A5|G|1612
4V6X|1|A5|A|1613
4V6X|1|A5|C|1614
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain CA
- 60S ribosomal protein L8
- Chain CR
- 60S ribosomal protein L19
- Chain Cg
- 60S ribosomal protein L34
- Chain Cp
- 60S ribosomal protein L37a
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