J3_4V6X_007

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6X_007 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2644

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

4V6X|1|A5|G|1969
4V6X|1|A5|A|1970
4V6X|1|A5|C|1971
*
4V6X|1|A5|G|1995
4V6X|1|A5|C|1996
4V6X|1|A5|U|1997
4V6X|1|A5|A|1998
4V6X|1|A5|A|1999
4V6X|1|A5|G|2000
4V6X|1|A5|G|2001
*
4V6X|1|A5|C|2016
4V6X|1|A5|A|2017
4V6X|1|A5|C|2018

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CK

60S ribosomal protein L12

Chain Cq

60S acidic ribosomal protein P0