J3_4V6X_008

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

4V6X|1|A5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6X_008 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.188

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

4V6X|1|A5|C|2393
4V6X|1|A5|G|2394
4V6X|1|A5|A|2395
4V6X|1|A5|A|2396
4V6X|1|A5|G|2397
4V6X|1|A5|U|2398
4V6X|1|A5|G|2399
*
4V6X|1|A5|C|2805
4V6X|1|A5|A|2806
4V6X|1|A5|A|2807
*
4V6X|1|A5|U|2819
4V6X|1|A5|C|2820
4V6X|1|A5|U|2821
4V6X|1|A5|G|2822

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CR

60S ribosomal protein L19

Chain Cg

60S ribosomal protein L34