J3_4V6X_011
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- ACGG*CUGACC*GGGACAGU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6X_011 not in the Motif Atlas
- Homologous match to J3_5TBW_012
- Geometric discrepancy: 0.1088
- The information below is about J3_5TBW_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V6X|1|A5|A|3936
4V6X|1|A5|C|3937
4V6X|1|A5|G|3938
4V6X|1|A5|G|3939
*
4V6X|1|A5|C|4074
4V6X|1|A5|U|4075
4V6X|1|A5|G|4076
4V6X|1|A5|A|4077
4V6X|1|A5|C|4078
4V6X|1|A5|C|4079
*
4V6X|1|A5|G|4167
4V6X|1|A5|G|4168
4V6X|1|A5|G|4169
4V6X|1|A5|A|4170
4V6X|1|A5|C|4171
4V6X|1|A5|A|4172
4V6X|1|A5|G|4173
4V6X|1|A5|U|4174
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain CA
- 60S ribosomal protein L8
- Chain CG
- 60S ribosomal protein L7a
- Chain CN
- 60S ribosomal protein L15
- Chain Ci
- 60S ribosomal protein L36
Coloring options: