J3_4V6X_016
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 4V6X|1|A8|A|62, 4V6X|1|A8|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6X_016 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.2359
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V6X|1|A8|A|44
4V6X|1|A8|C|45
*
4V6X|1|A8|G|58
4V6X|1|A8|A|59
4V6X|1|A8|G|60
4V6X|1|A8|A|61
4V6X|1|A8|A|62
4V6X|1|A8|U|63
4V6X|1|A8|U|64
*
4V6X|1|A8|A|95
4V6X|1|A8|C|96
4V6X|1|A8|A|97
4V6X|1|A8|C|98
4V6X|1|A8|U|99
Current chains
- Chain A8
- 5.8S ribosomal RNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain CX
- 60S ribosomal protein L23a
- Chain Ch
- 60S ribosomal protein L35
- Chain Cj
- 60S ribosomal protein L37
- Chain Cl
- 60S ribosomal protein L39
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