J3_4V6X_017

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6X_017 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.1335

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

4V6X|1|B2|A|40
4V6X|1|B2|G|41
*
4V6X|1|B2|C|481
4V6X|1|B2|G|482
4V6X|1|B2|C|483
4V6X|1|B2|A|484
4V6X|1|B2|A|485
4V6X|1|B2|A|486
4V6X|1|B2|U|487
*
4V6X|1|B2|A|512
4V6X|1|B2|G|513
4V6X|1|B2|U|514

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AX

40S ribosomal protein S23

Chain Az

Elongation factor 2