J3_4V6X_030
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 4V6X|1|A5|U|354, 4V6X|1|A5|A|362, 4V6X|1|A8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6X_030 not in the Motif Atlas
- Homologous match to J3_8C3A_047
- Geometric discrepancy: 0.1236
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
4V6X|1|A5|C|351
4V6X|1|A5|G|352
4V6X|1|A5|A|353
4V6X|1|A5|U|354
4V6X|1|A5|A|355
4V6X|1|A5|G|356
4V6X|1|A5|U|357
4V6X|1|A5|C|358
4V6X|1|A5|A|359
4V6X|1|A5|A|360
4V6X|1|A5|C|361
4V6X|1|A5|A|362
4V6X|1|A5|A|363
4V6X|1|A5|G|364
4V6X|1|A5|U|365
4V6X|1|A5|A|366
4V6X|1|A5|C|367
*
4V6X|1|A5|G|374
4V6X|1|A5|G|375
4V6X|1|A5|A|376
4V6X|1|A5|A|377
4V6X|1|A5|A|378
4V6X|1|A5|G|379
*
4V6X|1|A8|C|21
4V6X|1|A8|U|22
4V6X|1|A8|C|23
4V6X|1|A8|G|24
Current chains
- Chain A5
- 28S ribosomal RNA
- Chain A8
- 5.8S ribosomal RNA
Nearby chains
- Chain CC
- 60S ribosomal protein L4
- Chain CY
- 60S ribosomal protein L26
- Chain Cj
- 60S ribosomal protein L37
- Chain Cl
- 60S ribosomal protein L39
Coloring options: