J3_4V6X_031
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 4V6X|1|A5|G|409, 4V6X|1|A5|G|413
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6X_031 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.1313
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
4V6X|1|A5|U|380
4V6X|1|A5|U|381
4V6X|1|A5|G|382
4V6X|1|A5|A|383
4V6X|1|A5|A|384
4V6X|1|A5|A|385
4V6X|1|A5|A|386
4V6X|1|A5|G|387
4V6X|1|A5|A|388
4V6X|1|A5|A|389
4V6X|1|A5|C|390
*
4V6X|1|A5|G|401
4V6X|1|A5|A|402
4V6X|1|A5|G|403
4V6X|1|A5|U|404
4V6X|1|A5|U|405
4V6X|1|A5|C|406
4V6X|1|A5|A|407
4V6X|1|A5|A|408
4V6X|1|A5|G|409
4V6X|1|A5|A|410
4V6X|1|A5|G|411
4V6X|1|A5|G|412
4V6X|1|A5|G|413
4V6X|1|A5|C|414
4V6X|1|A5|G|415
*
4V6X|1|A8|C|19
4V6X|1|A8|A|20
Current chains
- Chain A5
- 28S ribosomal RNA
- Chain A8
- 5.8S ribosomal RNA
Nearby chains
- Chain CC
- 60S ribosomal protein L4
- Chain CP
- 60S ribosomal protein L17
- Chain CY
- 60S ribosomal protein L26
- Chain Cl
- 60S ribosomal protein L39
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