J3_4V6X_040

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

4V6X|1|B2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6X_040 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1181

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V6X|1|B2|A|40
4V6X|1|B2|G|41
4V6X|1|B2|A|42
4V6X|1|B2|U|43
4V6X|1|B2|U|44
4V6X|1|B2|A|45
4V6X|1|B2|A|46
4V6X|1|B2|G|47
*
4V6X|1|B2|C|479
4V6X|1|B2|G|480
4V6X|1|B2|C|481
4V6X|1|B2|G|482
4V6X|1|B2|C|483
4V6X|1|B2|A|484
4V6X|1|B2|A|485
4V6X|1|B2|A|486
4V6X|1|B2|U|487
*
4V6X|1|B2|A|512
4V6X|1|B2|G|513
4V6X|1|B2|U|514

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AX

40S ribosomal protein S23

Chain Az

Elongation factor 2