J3_4V6X_046

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UU*AGAAG*CGUGG

Length

12 nucleotides

Bulged bases

4V6X|1|A5|A|1805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6X_046 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.5738

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4V6X|1|A5|U|1726
4V6X|1|A5|U|1727
*
4V6X|1|A5|A|1802
4V6X|1|A5|G|1803
4V6X|1|A5|A|1804
4V6X|1|A5|A|1805
4V6X|1|A5|G|1806
*
4V6X|1|A5|C|1832
4V6X|1|A5|G|1833
4V6X|1|A5|U|1834
4V6X|1|A5|G|1835
4V6X|1|A5|G|1836

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CF

60S ribosomal protein L7

Chain CT

60S ribosomal protein L21

Chain Cb

60S ribosomal protein L29