J3_4V6X_047

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UGG*UAAGA*UA

Length

10 nucleotides

Bulged bases

4V6X|1|B2|G|921

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6X_047 not in the Motif Atlas

Homologous match to J3_8P9A_071

Geometric discrepancy: 0.2546

The information below is about J3_8P9A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01633.1

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4V6X|1|B2|U|682
4V6X|1|B2|G|683
4V6X|1|B2|G|684
*
4V6X|1|B2|U|918
4V6X|1|B2|A|919
4V6X|1|B2|A|920
4V6X|1|B2|G|921
4V6X|1|B2|A|922
*
4V6X|1|B2|U|1022
4V6X|1|B2|A|1023

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AH

40S ribosomal protein S7

Chain AL

40S ribosomal protein S11

Chain AN

40S ribosomal protein S13

Chain AW

40S ribosomal protein S15a

Chain AX

40S ribosomal protein S23

Chain Ab

40S ribosomal protein S27