J3_4V6Y_014

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4V6Y|1|BA|U|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6Y_014 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3782

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V6Y|1|BA|U|683
4V6Y|1|BA|G|684
4V6Y|1|BA|A|685
4V6Y|1|BA|U|686
4V6Y|1|BA|C|687
4V6Y|1|BA|U|688
4V6Y|1|BA|A|689
*
4V6Y|1|BA|U|773
4V6Y|1|BA|G|774
4V6Y|1|BA|G|775
*
4V6Y|1|BA|C|791
4V6Y|1|BA|A|792
4V6Y|1|BA|A|793
4V6Y|1|BA|A|794

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L32

Chain BC

50S ribosomal protein L35

Chain BE

50S ribosomal protein L2