3D structure

PDB id
4V72 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)
Experimental method
ELECTRON MICROSCOPY
Resolution
13 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V72_009 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.2361
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4V72|1|AA|C|1063
4V72|1|AA|G|1064
4V72|1|AA|U|1065
4V72|1|AA|C|1066
4V72|1|AA|A|1067
4V72|1|AA|G|1068
*
4V72|1|AA|C|1107
4V72|1|AA|G|1108
4V72|1|AA|C|1109
4V72|1|AA|A|1110
4V72|1|AA|A|1111
4V72|1|AA|C|1112
4V72|1|AA|C|1113
*
4V72|1|AA|G|1187
4V72|1|AA|A|1188
4V72|1|AA|U|1189
4V72|1|AA|G|1190
4V72|1|AA|A|1191
4V72|1|AA|C|1192
4V72|1|AA|G|1193

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AC
30S ribosomal protein S3
Chain AE
30S ribosomal protein S5
Chain AI
30S ribosomal protein S9
Chain AJ
30S ribosomal protein S10
Chain AN
30S ribosomal protein S14

Coloring options:


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