J3_4V72_012

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4V72|1|AA|U|1240, 4V72|1|AA|C|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V72_012 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.5829

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

4V72|1|AA|C|1237
4V72|1|AA|A|1238
4V72|1|AA|A|1239
4V72|1|AA|U|1240
4V72|1|AA|G|1241
*
4V72|1|AA|C|1296
4V72|1|AA|G|1297
4V72|1|AA|U|1298
4V72|1|AA|A|1299
4V72|1|AA|G|1300
4V72|1|AA|U|1301
4V72|1|AA|C|1302
4V72|1|AA|C|1303
*
4V72|1|AA|G|1334
4V72|1|AA|U|1335
4V72|1|AA|C|1336
4V72|1|AA|G|1337

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13