J3_4V74_032

3D structure

PDB id

4V74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

4V74|1|BA|U|34, 4V74|1|BA|U|448, 4V74|1|BA|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V74_032 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.2127

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

4V74|1|BA|C|32
4V74|1|BA|C|33
4V74|1|BA|U|34
4V74|1|BA|G|35
*
4V74|1|BA|C|445
4V74|1|BA|G|446
4V74|1|BA|A|447
4V74|1|BA|U|448
4V74|1|BA|A|449
4V74|1|BA|G|450
4V74|1|BA|U|451
4V74|1|BA|G|452
4V74|1|BA|A|453
4V74|1|BA|A|454
4V74|1|BA|C|455
4V74|1|BA|C|456
4V74|1|BA|A|457
4V74|1|BA|G|458
4V74|1|BA|U|459
4V74|1|BA|A|460
4V74|1|BA|C|461
*
4V74|1|BA|G|468
4V74|1|BA|G|469
4V74|1|BA|A|470
4V74|1|BA|A|471
4V74|1|BA|A|472
4V74|1|BA|G|473

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BE

50S ribosomal protein L4

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BT

50S ribosomal protein L23