3D structure

PDB id
4V75 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)
Experimental method
ELECTRON MICROSCOPY
Resolution
12 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4V75|1|BA|U|34, 4V75|1|BA|U|448, 4V75|1|BA|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V75_033 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.2034
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4V75|1|BA|C|32
4V75|1|BA|C|33
4V75|1|BA|U|34
4V75|1|BA|G|35
*
4V75|1|BA|C|445
4V75|1|BA|G|446
4V75|1|BA|A|447
4V75|1|BA|U|448
4V75|1|BA|A|449
4V75|1|BA|G|450
4V75|1|BA|U|451
4V75|1|BA|G|452
4V75|1|BA|A|453
4V75|1|BA|A|454
4V75|1|BA|C|455
4V75|1|BA|C|456
4V75|1|BA|A|457
4V75|1|BA|G|458
4V75|1|BA|U|459
4V75|1|BA|A|460
4V75|1|BA|C|461
*
4V75|1|BA|G|468
4V75|1|BA|G|469
4V75|1|BA|A|470
4V75|1|BA|A|471
4V75|1|BA|A|472
4V75|1|BA|G|473

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B2
50S ribosomal protein L34
Chain BE
50S ribosomal protein L4
Chain BQ
50S ribosomal protein L20
Chain BT
50S ribosomal protein L23

Coloring options:


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