3D structure

PDB id
4V76 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
4V76|1|AA|U|1240
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V76_012 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.3273
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4V76|1|AA|C|1237
4V76|1|AA|A|1238
4V76|1|AA|A|1239
4V76|1|AA|U|1240
4V76|1|AA|G|1241
*
4V76|1|AA|C|1296
4V76|1|AA|G|1297
4V76|1|AA|U|1298
4V76|1|AA|A|1299
4V76|1|AA|G|1300
4V76|1|AA|U|1301
4V76|1|AA|C|1302
4V76|1|AA|C|1303
*
4V76|1|AA|G|1334
4V76|1|AA|U|1335
4V76|1|AA|C|1336
4V76|1|AA|G|1337

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain A3
Transfer RNA; tRNA
Chain AG
30S ribosomal protein S7
Chain AM
30S ribosomal protein S13

Coloring options:


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