J3_4V77_020

3D structure

PDB id

4V77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V77_020 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.3185

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V77|1|BA|C|2091
4V77|1|BA|U|2092
4V77|1|BA|G|2093
*
4V77|1|BA|C|2196
4V77|1|BA|U|2197
4V77|1|BA|A|2198
4V77|1|BA|A|2199
4V77|1|BA|C|2200
*
4V77|1|BA|G|2223
4V77|1|BA|G|2224
4V77|1|BA|A|2225
4V77|1|BA|C|2226
4V77|1|BA|A|2227
4V77|1|BA|G|2228

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28