J3_4V77_031

3D structure

PDB id

4V77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V77|1|BA|A|504, 4V77|1|BA|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V77_031 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.1993

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V77|1|BA|G|30
4V77|1|BA|C|31
*
4V77|1|BA|G|474
4V77|1|BA|C|475
4V77|1|BA|G|476
4V77|1|BA|A|477
4V77|1|BA|A|478
4V77|1|BA|A|479
4V77|1|BA|A|480
4V77|1|BA|G|481
4V77|1|BA|A|482
4V77|1|BA|A|483
4V77|1|BA|C|484
*
4V77|1|BA|G|496
4V77|1|BA|A|497
4V77|1|BA|G|498
4V77|1|BA|U|499
4V77|1|BA|G|500
4V77|1|BA|A|501
4V77|1|BA|A|502
4V77|1|BA|A|503
4V77|1|BA|A|504
4V77|1|BA|A|505
4V77|1|BA|G|506
4V77|1|BA|A|507
4V77|1|BA|A|508
4V77|1|BA|C|509
4V77|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24