J3_4V78_028
3D structure
- PDB id
- 4V78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 20 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 4V78|1|AA|C|48, 4V78|1|AA|A|50, 4V78|1|AA|A|51
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V78_028 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.1557
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V78|1|AA|G|46
4V78|1|AA|C|47
4V78|1|AA|C|48
4V78|1|AA|U|49
4V78|1|AA|A|50
4V78|1|AA|A|51
4V78|1|AA|C|52
*
4V78|1|AA|G|359
4V78|1|AA|G|360
4V78|1|AA|G|361
4V78|1|AA|G|362
4V78|1|AA|A|363
4V78|1|AA|A|364
4V78|1|AA|U|365
4V78|1|AA|A|366
4V78|1|AA|U|367
*
4V78|1|AA|A|393
4V78|1|AA|G|394
4V78|1|AA|C|395
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AL
- 30S ribosomal protein S12
- Chain AP
- 30S ribosomal protein S16
Coloring options: