J3_4V7A_029

3D structure

PDB id

4V7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V7A|1|BA|A|504, 4V7A|1|BA|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7A_029 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.2042

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V7A|1|BA|G|30
4V7A|1|BA|C|31
*
4V7A|1|BA|G|474
4V7A|1|BA|C|475
4V7A|1|BA|G|476
4V7A|1|BA|A|477
4V7A|1|BA|A|478
4V7A|1|BA|A|479
4V7A|1|BA|A|480
4V7A|1|BA|G|481
4V7A|1|BA|A|482
4V7A|1|BA|A|483
4V7A|1|BA|C|484
*
4V7A|1|BA|G|496
4V7A|1|BA|A|497
4V7A|1|BA|G|498
4V7A|1|BA|U|499
4V7A|1|BA|G|500
4V7A|1|BA|A|501
4V7A|1|BA|A|502
4V7A|1|BA|A|503
4V7A|1|BA|A|504
4V7A|1|BA|A|505
4V7A|1|BA|G|506
4V7A|1|BA|A|507
4V7A|1|BA|A|508
4V7A|1|BA|C|509
4V7A|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24