3D structure

PDB id
4V7B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Visualization of two tRNAs trapped in transit during EF-G-mediated translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4V7B|1|BA|U|34, 4V7B|1|BA|U|448, 4V7B|1|BA|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7B_030 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.0617
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4V7B|1|BA|C|32
4V7B|1|BA|C|33
4V7B|1|BA|U|34
4V7B|1|BA|G|35
*
4V7B|1|BA|C|445
4V7B|1|BA|G|446
4V7B|1|BA|A|447
4V7B|1|BA|U|448
4V7B|1|BA|A|449
4V7B|1|BA|G|450
4V7B|1|BA|U|451
4V7B|1|BA|G|452
4V7B|1|BA|A|453
4V7B|1|BA|A|454
4V7B|1|BA|C|455
4V7B|1|BA|C|456
4V7B|1|BA|A|457
4V7B|1|BA|G|458
4V7B|1|BA|U|459
4V7B|1|BA|A|460
4V7B|1|BA|C|461
*
4V7B|1|BA|G|468
4V7B|1|BA|G|469
4V7B|1|BA|A|470
4V7B|1|BA|A|471
4V7B|1|BA|A|472
4V7B|1|BA|G|473

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B2
50S ribosomal protein L34
Chain BE
50S ribosomal protein L4
Chain BQ
50S ribosomal protein L20
Chain BT
50S ribosomal protein L23

Coloring options:


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