J3_4V7C_041

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7C_041 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.1398

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4V7C|1|AA|C|936
4V7C|1|AA|A|937
4V7C|1|AA|A|938
4V7C|1|AA|G|939
*
4V7C|1|AA|C|1344
4V7C|1|AA|U|1345
4V7C|1|AA|A|1346
4V7C|1|AA|G|1347
4V7C|1|AA|U|1348
4V7C|1|AA|A|1349
4V7C|1|AA|A|1350
*
4V7C|1|AA|U|1372
4V7C|1|AA|G|1373
4V7C|1|AA|A|1374
4V7C|1|AA|A|1375
4V7C|1|AA|U|1376
4V7C|1|AA|A|1377
4V7C|1|AA|C|1378
4V7C|1|AA|G|1379

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9