J3_4V7D_006

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

4V7D|1|AA|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7D_006 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.14

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V7D|1|AA|C|2091
4V7D|1|AA|U|2092
4V7D|1|AA|G|2093
*
4V7D|1|AA|C|2196
4V7D|1|AA|U|2197
4V7D|1|AA|A|2198
4V7D|1|AA|A|2199
4V7D|1|AA|C|2200
*
4V7D|1|AA|G|2223
4V7D|1|AA|G|2224
4V7D|1|AA|A|2225
4V7D|1|AA|C|2226
4V7D|1|AA|A|2227
4V7D|1|AA|G|2228

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L28

Chain AD

50S ribosomal protein L2

Chain AI

50S ribosomal protein L9