J3_4V7E_001
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CAGCUUGAGAA*UAGUCUGGAG*CAACG
- Length
- 26 nucleotides
- Bulged bases
- 4V7E|1|Aa|U|116, 4V7E|1|Aa|G|155
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7E_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.3128
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V7E|1|Aa|C|112
4V7E|1|Aa|A|113
4V7E|1|Aa|G|114
4V7E|1|Aa|C|115
4V7E|1|Aa|U|116
4V7E|1|Aa|U|117
4V7E|1|Aa|G|118
4V7E|1|Aa|A|119
4V7E|1|Aa|G|120
4V7E|1|Aa|A|121
4V7E|1|Aa|A|122
*
4V7E|1|Aa|U|148
4V7E|1|Aa|A|149
4V7E|1|Aa|G|150
4V7E|1|Aa|U|151
4V7E|1|Aa|C|152
4V7E|1|Aa|U|153
4V7E|1|Aa|G|154
4V7E|1|Aa|G|155
4V7E|1|Aa|A|156
4V7E|1|Aa|G|157
*
4V7E|1|Aa|C|261
4V7E|1|Aa|A|262
4V7E|1|Aa|A|263
4V7E|1|Aa|C|264
4V7E|1|Aa|G|265
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain CG
- 60S ribosomal protein L8E
- Chain CL
- 60S ribosomal protein L13E
- Chain CN
- 60S ribosomal protein L15E
- Chain Ch
- 60S ribosomal protein L29
- Chain Ci
- 60S ribosomal protein L36E
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