J3_4V7E_004

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCGG*CGAAG*UCUGAC

Length

15 nucleotides

Bulged bases

4V7E|1|Aa|A|899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7E_004 not in the Motif Atlas

Homologous match to J3_5TBW_005

Geometric discrepancy: 0.1707

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V7E|1|Aa|G|831
4V7E|1|Aa|C|832
4V7E|1|Aa|G|833
4V7E|1|Aa|G|834
*
4V7E|1|Aa|C|866
4V7E|1|Aa|G|867
4V7E|1|Aa|A|868
4V7E|1|Aa|A|869
4V7E|1|Aa|G|870
*
4V7E|1|Aa|U|895
4V7E|1|Aa|C|896
4V7E|1|Aa|U|897
4V7E|1|Aa|G|898
4V7E|1|Aa|A|899
4V7E|1|Aa|C|900

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CA

60S ribosomal protein L2

Chain CR

60S ribosomal protein L19E

Chain Cg

60S ribosomal protein L34E