J3_4V7E_005

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7E_005 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.3735

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

4V7E|1|Aa|G|1234
4V7E|1|Aa|A|1235
4V7E|1|Aa|C|1236
*
4V7E|1|Aa|G|1260
4V7E|1|Aa|C|1261
4V7E|1|Aa|U|1262
4V7E|1|Aa|A|1263
4V7E|1|Aa|A|1264
4V7E|1|Aa|G|1265
4V7E|1|Aa|G|1266
*
4V7E|1|Aa|C|1281
4V7E|1|Aa|A|1282
4V7E|1|Aa|C|1283

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CK

60S ribosomal protein L11

Chain Cm

60S ribosomal protein L40E

Chain Cq

60S acidic ribosomal protein P0