J3_4V7E_006

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGAAGAG*CAA*UCUG

Length

14 nucleotides

Bulged bases

4V7E|1|Aa|A|1485, 4V7E|1|Aa|A|1487

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7E_006 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1759

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

4V7E|1|Aa|C|1482
4V7E|1|Aa|G|1483
4V7E|1|Aa|A|1484
4V7E|1|Aa|A|1485
4V7E|1|Aa|G|1486
4V7E|1|Aa|A|1487
4V7E|1|Aa|G|1488
*
4V7E|1|Aa|C|1853
4V7E|1|Aa|A|1854
4V7E|1|Aa|A|1855
*
4V7E|1|Aa|U|1867
4V7E|1|Aa|C|1868
4V7E|1|Aa|U|1869
4V7E|1|Aa|G|1870

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CR

60S ribosomal protein L19E

Chain Cg

60S ribosomal protein L34E