J3_4V7E_014
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CCA*UUAUG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7E_014 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.261
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V7E|1|Ad|C|1042
4V7E|1|Ad|C|1043
4V7E|1|Ad|A|1044
*
4V7E|1|Ad|U|1084
4V7E|1|Ad|U|1085
4V7E|1|Ad|A|1086
4V7E|1|Ad|U|1087
4V7E|1|Ad|G|1088
*
4V7E|1|Ad|C|1095
4V7E|1|Ad|A|1096
4V7E|1|Ad|A|1097
4V7E|1|Ad|A|1098
4V7E|1|Ad|G|1099
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain BA
- 40S ribosomal protein S2
- Chain BC
- 40S ribosomal protein S5
- Chain BV
- 40S ribosomal protein S21E
- Chain BW
- 40S ribosomal protein S8
- Chain BX
- 40S ribosomal protein S12
- Chain Ba
- 40S ribosomal protein S26E
- Chain Bb
- 40S ribosomal protein S27E
Coloring options: