J3_4V7E_016
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7E_016 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.1876
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V7E|1|Ad|U|1173
4V7E|1|Ad|G|1174
4V7E|1|Ad|G|1175
4V7E|1|Ad|A|1176
*
4V7E|1|Ad|U|1474
4V7E|1|Ad|A|1475
4V7E|1|Ad|C|1476
*
4V7E|1|Ad|G|1582
4V7E|1|Ad|G|1583
4V7E|1|Ad|A|1584
4V7E|1|Ad|A|1585
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain Ae
- Transfer RNA; tRNA
- Chain BF
- 40S ribosomal protein S7
- Chain BQ
- 40S ribosomal protein S9
- Chain BS
- 40S ribosomal protein S13
- Chain BT
- 40S ribosomal protein S19E
- Chain BZ
- 40S ribosomal protein S25E
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