J3_4V7E_017
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUUAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 4V7E|1|Ad|G|1203, 4V7E|1|Ad|G|1205, 4V7E|1|Ad|C|1463
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7E_017 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.2976
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V7E|1|Ad|C|1184
4V7E|1|Ad|U|1185
4V7E|1|Ad|U|1186
4V7E|1|Ad|A|1187
4V7E|1|Ad|A|1188
4V7E|1|Ad|U|1189
4V7E|1|Ad|U|1190
4V7E|1|Ad|U|1191
*
4V7E|1|Ad|G|1202
4V7E|1|Ad|G|1203
4V7E|1|Ad|G|1204
4V7E|1|Ad|G|1205
4V7E|1|Ad|A|1206
4V7E|1|Ad|A|1207
4V7E|1|Ad|A|1208
4V7E|1|Ad|C|1209
4V7E|1|Ad|U|1210
4V7E|1|Ad|U|1211
4V7E|1|Ad|A|1212
4V7E|1|Ad|C|1213
*
4V7E|1|Ad|G|1460
4V7E|1|Ad|G|1461
4V7E|1|Ad|C|1462
4V7E|1|Ad|C|1463
4V7E|1|Ad|G|1464
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain BP
- 40S ribosomal protein S19
- Chain BQ
- 40S ribosomal protein S9
- Chain BS
- 40S ribosomal protein S13
- Chain BU
- 40S ribosomal protein S10
- Chain Bd
- 40S ribosomal protein S14
- Chain Bf
- 40S ribosomal protein S31e
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