J3_4V7E_023

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGAUAGCGAACAAGUAC*GGAAAG*CUCG

Length

27 nucleotides

Bulged bases

4V7E|1|Aa|U|341, 4V7E|1|Aa|A|349, 4V7E|1|Ac|C|23

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7E_023 not in the Motif Atlas

Homologous match to J3_8P9A_045

Geometric discrepancy: 0.1255

The information below is about J3_8P9A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

4V7E|1|Aa|C|338
4V7E|1|Aa|G|339
4V7E|1|Aa|A|340
4V7E|1|Aa|U|341
4V7E|1|Aa|A|342
4V7E|1|Aa|G|343
4V7E|1|Aa|C|344
4V7E|1|Aa|G|345
4V7E|1|Aa|A|346
4V7E|1|Aa|A|347
4V7E|1|Aa|C|348
4V7E|1|Aa|A|349
4V7E|1|Aa|A|350
4V7E|1|Aa|G|351
4V7E|1|Aa|U|352
4V7E|1|Aa|A|353
4V7E|1|Aa|C|354
*
4V7E|1|Aa|G|361
4V7E|1|Aa|G|362
4V7E|1|Aa|A|363
4V7E|1|Aa|A|364
4V7E|1|Aa|A|365
4V7E|1|Aa|G|366
*
4V7E|1|Ac|C|21
4V7E|1|Ac|U|22
4V7E|1|Ac|C|23
4V7E|1|Ac|G|24

Current chains

Chain Aa

60S ribosomal RNA

Chain Ac

5.8S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CY

60S ribosomal protein L24

Chain Cj

60S ribosomal protein L37E

Chain Cl

60S ribosomal protein L39E