J3_4V7E_024
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- AUGAAAAG*CU*AU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7E_024 not in the Motif Atlas
- Geometric match to J3_8C3A_048
- Geometric discrepancy: 0.1091
- The information below is about J3_8C3A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
4V7E|1|Aa|A|367
4V7E|1|Aa|U|368
4V7E|1|Aa|G|369
4V7E|1|Aa|A|370
4V7E|1|Aa|A|371
4V7E|1|Aa|A|372
4V7E|1|Aa|A|373
4V7E|1|Aa|G|374
*
4V7E|1|Aa|C|401
4V7E|1|Aa|U|402
*
4V7E|1|Ac|A|19
4V7E|1|Ac|U|20
Current chains
- Chain Aa
- 60S ribosomal RNA
- Chain Ac
- 5.8S ribosomal RNA
Nearby chains
- Chain CC
- 60S ribosomal protein L4
- Chain CP
- 60S ribosomal protein L22
- Chain CY
- 60S ribosomal protein L24
- Chain Cl
- 60S ribosomal protein L39E
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