J3_4V7E_025

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AUGAAAAGGAC*GAGUCAAAGAGUGCU*AU

Length

28 nucleotides

Bulged bases

4V7E|1|Aa|G|396, 4V7E|1|Aa|G|400

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7E_025 not in the Motif Atlas

Homologous match to J3_8C3A_049

Geometric discrepancy: 0.1187

The information below is about J3_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91149.1

Basepair signature

cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

4V7E|1|Aa|A|367
4V7E|1|Aa|U|368
4V7E|1|Aa|G|369
4V7E|1|Aa|A|370
4V7E|1|Aa|A|371
4V7E|1|Aa|A|372
4V7E|1|Aa|A|373
4V7E|1|Aa|G|374
4V7E|1|Aa|G|375
4V7E|1|Aa|A|376
4V7E|1|Aa|C|377
*
4V7E|1|Aa|G|388
4V7E|1|Aa|A|389
4V7E|1|Aa|G|390
4V7E|1|Aa|U|391
4V7E|1|Aa|C|392
4V7E|1|Aa|A|393
4V7E|1|Aa|A|394
4V7E|1|Aa|A|395
4V7E|1|Aa|G|396
4V7E|1|Aa|A|397
4V7E|1|Aa|G|398
4V7E|1|Aa|U|399
4V7E|1|Aa|G|400
4V7E|1|Aa|C|401
4V7E|1|Aa|U|402
*
4V7E|1|Ac|A|19
4V7E|1|Ac|U|20

Current chains

Chain Aa

60S ribosomal RNA

Chain Ac

5.8S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CP

60S ribosomal protein L22

Chain CY

60S ribosomal protein L24

Chain Cl

60S ribosomal protein L39E