J3_4V7E_034

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUC*GCCUAUCGAUCC*GGUGUC

Length

21 nucleotides

Bulged bases

4V7E|1|Aa|U|2799

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7E_034 not in the Motif Atlas

Homologous match to J3_8C3A_056

Geometric discrepancy: 0.1218

The information below is about J3_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_27903.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V7E|1|Aa|G|2654
4V7E|1|Aa|U|2655
4V7E|1|Aa|C|2656
*
4V7E|1|Aa|G|2757
4V7E|1|Aa|C|2758
4V7E|1|Aa|C|2759
4V7E|1|Aa|U|2760
4V7E|1|Aa|A|2761
4V7E|1|Aa|U|2762
4V7E|1|Aa|C|2763
4V7E|1|Aa|G|2764
4V7E|1|Aa|A|2765
4V7E|1|Aa|U|2766
4V7E|1|Aa|C|2767
4V7E|1|Aa|C|2768
*
4V7E|1|Aa|G|2795
4V7E|1|Aa|G|2796
4V7E|1|Aa|U|2797
4V7E|1|Aa|G|2798
4V7E|1|Aa|U|2799
4V7E|1|Aa|C|2800

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L21E

Chain Ca

60S ribosomal protein L15

Chain Co

60S ribosomal protein L44E