J3_4V7E_035

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UAUC*GUU*ACCAAUA

Length

14 nucleotides

Bulged bases

4V7E|1|Aa|A|2889

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7E_035 not in the Motif Atlas

Homologous match to J3_8P9A_063

Geometric discrepancy: 0.1113

The information below is about J3_8P9A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4V7E|1|Aa|U|2888
4V7E|1|Aa|A|2889
4V7E|1|Aa|U|2890
4V7E|1|Aa|C|2891
*
4V7E|1|Aa|G|2916
4V7E|1|Aa|U|2917
4V7E|1|Aa|U|2918
*
4V7E|1|Aa|A|2932
4V7E|1|Aa|C|2933
4V7E|1|Aa|C|2934
4V7E|1|Aa|A|2935
4V7E|1|Aa|A|2936
4V7E|1|Aa|U|2937
4V7E|1|Aa|A|2938

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CO

60S ribosomal protein L13

Chain CV

60S ribosomal protein L14