J3_4V7E_043
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 4V7E|1|Ad|U|1289
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7E_043 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.2712
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V7E|1|Ad|U|1287
4V7E|1|Ad|C|1288
4V7E|1|Ad|U|1289
4V7E|1|Ad|U|1290
4V7E|1|Ad|A|1291
4V7E|1|Ad|G|1292
*
4V7E|1|Ad|C|1331
4V7E|1|Ad|G|1332
4V7E|1|Ad|A|1333
4V7E|1|Ad|G|1334
4V7E|1|Ad|A|1335
4V7E|1|Ad|C|1336
*
4V7E|1|Ad|G|1425
4V7E|1|Ad|C|1426
4V7E|1|Ad|A|1427
4V7E|1|Ad|A|1428
4V7E|1|Ad|U|1429
4V7E|1|Ad|A|1430
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain BC
- 40S ribosomal protein S5
- Chain BD
- 40S ribosomal protein S3
- Chain BQ
- 40S ribosomal protein S9
- Chain BR
- 40S ribosomal protein S17E
- Chain BU
- 40S ribosomal protein S10
- Chain Bd
- 40S ribosomal protein S14
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