J3_4V7E_044

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UG*UGUC*GUUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7E_044 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.1983

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4V7E|1|Ad|U|1297
4V7E|1|Ad|G|1298
*
4V7E|1|Ad|U|1307
4V7E|1|Ad|G|1308
4V7E|1|Ad|U|1309
4V7E|1|Ad|C|1310
*
4V7E|1|Ad|G|1322
4V7E|1|Ad|U|1323
4V7E|1|Ad|U|1324
4V7E|1|Ad|A|1325
4V7E|1|Ad|A|1326

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BA

40S ribosomal protein S2

Chain BC

40S ribosomal protein S5

Chain BR

40S ribosomal protein S17E