J3_4V7E_045
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- AGC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 4V7E|1|Ad|U|1419, 4V7E|1|Ad|U|1420
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7E_045 not in the Motif Atlas
- Geometric match to J3_8C3A_043
- Geometric discrepancy: 0.2812
- The information below is about J3_8C3A_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.3
- Basepair signature
- cWW-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4V7E|1|Ad|A|1340
4V7E|1|Ad|G|1341
4V7E|1|Ad|C|1342
*
4V7E|1|Ad|G|1392
4V7E|1|Ad|G|1393
4V7E|1|Ad|A|1394
4V7E|1|Ad|C|1395
*
4V7E|1|Ad|G|1418
4V7E|1|Ad|U|1419
4V7E|1|Ad|U|1420
4V7E|1|Ad|U|1421
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain BF
- 40S ribosomal protein S7
- Chain BQ
- 40S ribosomal protein S9
- Chain BR
- 40S ribosomal protein S17E
- Chain BU
- 40S ribosomal protein S10
- Chain Bd
- 40S ribosomal protein S14
- Chain Bg
- RACK1
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