J3_4V7E_051

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

4V7E|1|Ad|A|46, 4V7E|1|Ad|A|47

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7E_051 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1369

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V7E|1|Ad|A|41
4V7E|1|Ad|G|42
4V7E|1|Ad|A|43
4V7E|1|Ad|U|44
4V7E|1|Ad|U|45
4V7E|1|Ad|A|46
4V7E|1|Ad|A|47
4V7E|1|Ad|G|48
*
4V7E|1|Ad|C|435
4V7E|1|Ad|G|436
4V7E|1|Ad|C|437
4V7E|1|Ad|G|438
4V7E|1|Ad|C|439
4V7E|1|Ad|A|440
4V7E|1|Ad|A|441
4V7E|1|Ad|A|442
4V7E|1|Ad|U|443
*
4V7E|1|Ad|A|468
4V7E|1|Ad|G|469
4V7E|1|Ad|U|470

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BJ

40S ribosomal protein S4

Chain BX

40S ribosomal protein S12

Chain BY

40S ribosomal protein S24E